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Biosciences & Biomedical Engineering

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Lists of Publications of BSBE, IIT Indore



  1. Chaudhari R., Joshi A. B., Pandya K. and Srivastava R., pH based Urea Biosensing using FITC-Dextran encapsulated Micro-carriers of Calcium Alginate, Sensor Letters 14, 451-459 (2016)

  2. Pandey G. Chaudhari R. Joshi A*. Detection and Treatment Systems based on Optics and Photonics in New Age Healthcare Management, J Lasers Opt. Photonics, 3, e110, (2016)

  3. Tawani, A. and Amit Kumar*. Structural insight for the recognition of Gquadruplex structure at human cmyc promoter sequence by flavonoid Quercetin. Scientific Reports, 2016 (under review)

  4. Tawani, A., Mishra, S.K., Amanullah, A. Mishra, A., and Amit Kumar*. Evidences for Piperine inhibiting cancer by targeting human Gquadruplex DNA sequences. Scientific Reports, 2016

  5. Mishra, S.K., Tawani, A. Mishra, A., and Amit Kumar*. G4IPDB: A database for G-quadruplex structure forming nucleic acid interacting proteins, Scientific Reports, 2016

  6. Joshi, V., Amanullah, A., Upadhyay, A. Mishra, R., Amit Kumar and Mishra, A. A Decade of Boon Or Burden: What Has The CHIP Ever Done For Protein Cellular Quality Control Mechanism?. Frontiers in Molecular Neurosciences, 2016, http://dx.doi.org/10.3389/fnmol.2016.00093

  7. Mishra, S.K., and Amit Kumar*. NALDB: Nucleic Acid Ligand Database for small molecules targeting Nucleic acid. 2016. Database, doi:10.1093/database/baw002

  8. Das A., Adhikari C., Nayak D. and Chkraborty A. 2016. First evidence of the liposome mediated deintercalation of an anticancer drug doxorubicin from drug DNA complex: a spectroscopic approach. Langmuir, 2016, 32 (1), pp 159–170

  9. Baig MS, Yaqoob U, Cao S, Saqib U, Shah VH. Noncanonical role of matrix metalloprotease (MMP) in activation and migration of hepatic stellate cells (HSCs). Life Sci. 2016. S00243205( 16)30251X

  10. Uzma S, Baig MS. Simultaneous targeting of MyD88 and Nur77 as an effective approach for the treatment of inflammatory diseases. Drug. Des. Devel. Ther. 2016. 10:15571572

  11. Kiran, B*., Pathak, K., Kumar, R., Deshmukh, D., Rani, N., 2016, Influence of varying nitrogen levels on lipid accumulation in Chlorella sp., International Journal of Environmental Science and Technology, 13, 1823 1832 (Springer).

  12. Kiran, B*., Rani, N., Kaushik, A., 2016, Environmental toxicity: Exposure and impact of chromium on cyanobacterial species, In Press: Journal of Environmental Chemical Engineering (Elsevier).

  13. Kiran, B*., Kumar, R., Patidar, N., “Algae: An ecofriendly approach towards commercial products”, In Press: Microorganisms for Environmental, Medicine and Industrial Application edited by Rani, N., Joshi, M., Sagar, A., 2016 (ISBN: 9788121109505).

  14. Kiran, B*., Rani, N., and Kaushik, A., 2016, FTIR spectroscopy and Scanning Electron Microscopic analysis of pretreated biosorbent to observe the effect on Cr (VI) remediation, International Journal of Phytoremediation, 18 (11), 1067 1074 (Taylor and Francis).

  15. Kiran, B*., Pathak, K., Kumar, R., and Deshmukh, D., 2016, Statistical optimization using Central Composite Design for biomass and lipid productivity of microalga: a potential biodiesel feedstock, Ecological Engineering Journal, 92, 73 81 (Elsevier) http://authors.elsevier.com/a/1Sq4d3IWwQKoy.

  16. Kiran, B*., Pathak, K., Kumar, R., and Deshmukh, D., 2016, Growth pattern and biofuel production potential of newly isolated microalga, Chlorococcum sp. IM03 under nitrogen limited conditions, Journal of Chemical Technology & Biotechnology, 91 (5), 1339 1344 (Wiley).

  17. Kiran, B*., Pathak, K., Kumar, R., Deshmukh, D., 2016, “Phycoremediation: An ecofriendly approach to solve water pollution problems”, In press: Microbial Reservoirs edited by Kalia, V.C., Kumar, P.

  18. Kiran, B*., Pathak, K., Patidar, N., Kumar, R., and Deshmukh, D., 2016, Biomass harvesting techniques for microalgae: Status & Challenges, In press: Microalgae: Windows of opportunity edited by Sharma, M. and Chauhan, A. SBW Publishers, ISBN10: 8185708649, ISBN13: 9788185708645
  1. Tawani, A., and Amit Kumar*. Structural insights reveal the dynamics of the repeating r(CAG) transcript found in Huntington's disease (HD) and spinocerebellar ataxias (SCAs). Plos One. 2015. 10(7) . e0131788 doi: 10.1371/journal.pone.0131788

  2. Tawani, A., and Amit Kumar*. Structural Insight in to the interaction of Flavonoids with Human Telomeric Sequence. 2015. Scientific Reports. 2015, 5:17574

  3. S. Patidar, R.B. Pachori, and U.R. Acharya, Automated diagnosis of coronary artery disease using tunableQ wavelet transform applied on heart rate signals, KnowledgeBased Systems, In press, 2015.

  4. R.B. Pachori, P. Avinash, K. Shashank, R. Sharma, and U.R. Acharya, Application of empirical mode decomposition for analysis of normal and diabetic RRinterval signals, Expert Systems with Applications, vol. 42, issue 9, pp. 45674581, June 2015.

  5. S. Patidar, R.B. Pachori, and N. Garg, Automatic diagnosis of septal defects based on tunableQ wavelet transform of cardiac sound signals, Expert Systems with Applications, vol. 42, issue 7, pp. 33153326, May 2015.

  6. R. Sharma, R.B. Pachori, and U.R. Acharya, Application of entropy measures on intrinsic mode functions for the automated identification of focal electroencephalogram signals, Entropy, vol. 17, issue 2, pp. 669691, February 2015.

  7. R. Sharma and R.B. Pachori, Classification of epileptic seizures in EEG signals based on phase space representation of intrinsic mode functions, Expert Systems with Applications, vol. 42, issue 3, pp. 11061117, February 2015.

  8. T.S. Kumar, V. Kanhangad, and R.B. Pachori, Classification of seizure and seizurefree EEG signals using local binary patterns, Biomedical Signal Processing and Control, vol. 15, pp. 3340, January 2015.

  9. Roy, J., Nguygen, T. X., Kandaluru, A. K., Venkatesh, C., Lv, W., Reddy, P.V.N., Low, P. S., Cushman, M., 2015, Dupa conjugation of a cytotoxic indenoisoquinoline topoisomerase I inhibitor for selective prostate cancer cell targeting, J. Med. Chem., 000. DOI 10.1021/jm5018384. 2014

  10. Kiran, B., Pathak, K., Kumar, R., Deshmukh, D., 2014, Cultivation of Chlorella sp. IM01 in municipal wastewater for simultaneous nutrient removal and energy feedstock production, Ecological Engineering Journal, 73, 326330.

  11. Kiran, B., Kumar, R., Deshmukh, D., 2014, Perspectives of Microalgal Biofuels as a renewable source of energy, Energy Conversion and Management Journal, 88, 12281244.

  12. S. Patidar and R.B. Pachori, Classification of cardiac sound signals using constrained tunableQ wavelet transform, Expert Systems with Applications, vol. 41, issue 16, pp. 71617170, November
  1. R.B. Pachori and S. Patidar, Epileptic seizure classification in EEG signals using secondorder difference plot of intrinsic mode functions, Computer Methods and Programs in Biomedicine, vol. 113, issue 2, pp. 494502, February 2014.

  2. V. Joshi, R.B. Pachori, and A. Vijesh, Classification of ictal and seizurefree EEG signals using fractional linear prediction, Biomedical Signal Processing and Control, vol. 9, pp. 15, January 2014.

  3. Tsai, E. H. R., Bentz, B. Z., Venkatesh, C., Gaind, V., Webb, K. J., Low, P. S., 2014,In vivo mouse fluorescence imaging for targeted delivery kinetics, Optical Imaging, 5, 26622678.
  1. Kodgire, P., Mukkawar, P., Ratnam, S., Martin, T. E., Storb, U. 2013, Changes in RNA polymerase II progression influence somatic hypermutation of Igrelated genes by AID, Journal of Experimental Medicine, 210, 14811492

  2. S. Patidar and R.B. Pachori, Constrained tunableQ wavelet transform based analysis of cardiac sound signals, AASRI Procedia, vol. 4, pp. 5763, 2013.

  3. V. Bajaj and R.B. Pachori, Automatic classification of sleep stages based on the timefrequency image of EEG signals, Computer Methods and Programs in Biomedicine, vol. 112, issue 3, pp. 320328, December 2013.

  4. S. Patidar and R.B. Pachori, Segmentation of cardiac sound signals by removing murmurs using constrained tunableQ wavelet transform, Biomedical Signal Processing and Control, vol. 8, issue 6, pp. 559567, November 2013.

  5. V. Bajaj and R.B. Pachori, Epileptic seizure detection based on the instantaneous area of analytic intrinsic mode functions of EEG signals, Biomedical Engineering Letters, vol. 3, issue 1, pp. 1721, March 2013.

  6. Gaind, V., Tsai, H.R., Webb, K. J., Venkatesh, C., Low, P. S., 2013, Small animal optical diffusion tomography with targeted fluorescence, J. Opt. Soc. Am. A. 30, 1146.

  7. Lindsay, K., Venkatesh, C., Charity, W., Mahalingam, S., Scott, P., Sumith, K., Low, P. 2013, Development of tumortargeted near infrared probes for fluorescence guided surgery, S, Bioconjug. Chem., 24, 1075.

  8. Shen, J., Venkatesh, C., Cresswell, G., Low, P. S., 2013, Use of folateconjugated imaging agents to target alternatively activated macrophages in a murine model of asthma, Mol. Pharm., 10, 1918.

  9. Tsai, H.R., Bentz, B. Z., Venkatesh, C., Gaind, V., Webb, K. J., Low, P. S., 2013, In vivo optical imaging of kinetics in a small animal for folatetargeted drug development, Opt. Life Sci., Conference paper.

  10. S. Dhinakaran, M.S.N. Oliveira, F.T. Pinho and M.A. Alves (2013). Steady flow of powerlaw fluids in a 1:3 sudden expansion. Journal of NonNewtonian Fluid Mechanics, 198, 4858
  1. P. Kodgire, P. Mukkawar, J.A. North, M.G. Poirier and U. Storb (2012). Nucleosome stability dramatically impacts the targeting of somatic hypermutations, Molecular Cell Biology, 32(10), 20302040.

  2. A. Kumar, R. Parkesh, L.J. Sznajder, J. ChildsDisney, K. Sobczak, and M.D. Disney (2012) Chemical correction of premRNA splicing defects associated with sequestration of muscleblindlike 1 protein by expanded r(CAG) transcripts. ACS Chemical Biology 7(3), 496–505.

  3. Bankim J. Sanghvi, Shaikh M. Mobin, Ashwini K. Srivastava, Pradeep Mathur and Goutam Kumar Lahiri (2012). Biomimetic sensor for certain catecolamine semploying copper(II) complex and silver nanoparticle modified glassy carbon paste electrode, Biosensors and Bioelectronics, Accepted.

  4. V. Bajaj and R.B. Pachori (2012). Classification of seizure and nonseizure EEG signals using empirical mode decomposition, IEEE Transactions on Information Technology in Biomedicine, In press, 2012.

  5. S. Jalan, C.Y. Ung and B. Li (2012). Spectral analysis of gene coexpression network of zebrafish V. Balasubramanian, C. Venkatesh, S. A. Kularatne, S. Poh, W. AyalaLópez, P.S. Low. A folate receptor alphaspecific ligand that targets cancer tissue and not sites of inflammation. Journal of Nuclear Medicine, 00, 000, (2012). 10/24/2016 Biosciences and Biomedical Engineering

  6. E. O. Jonhson, KH. Chang, S. Ghosh, C. Venkatesh, K. Giger, P. S. Low, K. Shah (2012). LIMK2, A critical regulator effector of aurora A kinasemediated malignancy. Journal of Cell Science, 125, 1204.

  7. V. Bajaj and R.B. Pachori, Classification of seizure and nonseizure EEG signals using empirical mode decomposition, IEEE Transactions on Information Technology in Biomedicine, vol. 16, no. 6, pp. 11351142, November 2012
  1. Kumar, H. Park, P. Fang, M. Guo, K. Nettles and M.D. Disney (2011) Myotonic Dystrophy Type 1 RNA Crystal Structures Reveal Heterogeneous 1x1 Nucleotide UU Internal Loop Conformation. ACS Biochemistry. 50(45):992835

  2. V. Bajaj and R.B. Pachori (2011). Application of the sample entropy for discrimination between seizure and seizurefree EEG signals, Proceedings of the 5th Indian Conference on Artificial Intelligence, pp. 12321247, 1416 December, 2011, Tumkur, India.

  3. R.B. Pachori and V. Bajaj (2011). Analysis of normal and epileptic seizure EEG signals using empirical mode decomposition, Computer Methods and Programs in Biomedicine, 104(3), 373 381.

  4. R.B. Pachori and Hewson (2011), Assessment of the effects of sensory perturbations using FourierBessel expansion method for postural stability analysis, Journal of Intelligent Systems, 20(2), 167186.

  5. V. Bajaj and R.B. Pachori (2011). EEG signal classification using empirical mode decomposition and support vector machine, Proceedings International Conference on Soft Computing for Problem Solving, AISC 131, pp. 623635, 2022 December 2011, Roorkee, India.

  6. S. Jalan, Guimei Zhu and Baowen Li (2011), Spectral properties of directed random networks with modular structure, Physical Review E, 84, 046107.

  7. R.B. Pachori and V. Bajaj, Analysis of normal and epileptic seizure EEG signals using empirical mode decomposition, Computer Methods and Programs in Biomedicine, vol. 104, issue 3, pp. 373381, December 2011.

  8. R.B. Pachori and D. Hewson, Assessment of the effects of sensory perturbations using FourierBessel expansion method for postural stability analysis, Journal of Intelligent Systems, vol. 20, issue 2, pp. 167186, August 2011.
  1. Tanaka, H.M. Shen, S. Ratnam, P. Kodgire and U. Storb (2010). Attracting AID to targets of somatic hypermutation, J. Exp. Med. 207(2): 405415.

  2. S. A. Kularatne, C. Venkatesh, HK. Santhapuram, K.Wang, V. Balasubramanian, W. A. Henne, P. S. Low (2010). Synthesis and biological analysis of prostatespecific membrane antigen (PSMA)targeted anticancer prodrugs. Journal of Medical Chemistry, 53, 7767.

  3. Shaikh M. Mobin, Bankim J. Sanghvi, Ashwini K. Srivastava, Pradeep Mathur and Goutam Kumar Lahiri (2010). Biomemitic sensor for certain phenols employing a Cu (II)–complex, Analytical Chemistry, 82, 5983.

  4. S. Jalan, N. Solymosi, G. Vatty and B. Li (2010), Spectral analysis of localization properties of gene coexpression networks, Physical Review E, 81, 046118.